STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL96348.1Iron complex outermembrane recepter protein. (710 aa)    
Predicted Functional Partners:
SEL96364.1
Protein of unknown function.
 
     0.925
SEL96382.1
PAS domain S-box-containing protein.
 
   
 0.725
SEL96420.1
Iron complex outermembrane recepter protein.
 
    
0.647
SEL96401.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
       0.616
SEM01078.1
Outer membrane transport energization protein TonB.
 
 
 0.579
SEL96462.1
PAS domain S-box-containing protein.
     
 0.570
SEL96437.1
HAMP domain-containing protein.
 
     0.551
SEL96484.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
   
 0.513
SEM40913.1
Protein TonB.
  
 
 0.497
SEM47035.1
TonB family C-terminal domain-containing protein.
  
 
 0.497
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.