STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL94368.1Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (687 aa)    
Predicted Functional Partners:
SEM09826.1
4Fe-4S binding domain-containing protein.
  
 
 0.954
SEM41167.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.929
SEM25714.1
Cytochrome c nitrite reductase small subunit.
  
 0.869
SEL95044.1
Fe-S oxidoreductase.
 
 
 0.837
SEM18621.1
NADH-quinone oxidoreductase subunit F.
   
 0.807
SEM68056.1
4Fe-4S binding domain-containing protein.
   
 0.805
SEM74151.1
4Fe-4S binding domain-containing protein.
   
 0.805
SEL94382.1
Trm112p-like protein.
       0.776
SEM14192.1
4Fe-4S binding domain-containing protein.
 
 0.735
SEM04483.1
NifU-like protein.
     
 0.708
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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