STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM06892.1ABC-2 type transport system ATP-binding protein. (254 aa)    
Predicted Functional Partners:
SEM06824.1
ABC-2 type transport system permease protein.
 
 0.991
SEM06840.1
ABC-2 type transport system permease protein.
 
 0.991
SEM06910.1
HlyD family secretion protein.
 
  
 0.946
SEM09907.1
ABC-2 type transport system permease protein.
 
 0.876
SEM06880.1
ABC-2 type transport system ATP-binding protein.
 
    
0.805
SEM11956.1
ABC-2 type transport system permease protein.
 
 
 0.651
SEM67109.1
ABC transporter.
  
 0.617
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.562
SEM67135.1
ABC transporter transmembrane region.
   
 0.539
SEM67152.1
ATP-binding cassette, subfamily B.
   
0.539
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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