STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM09877.1Nitroreductase. (192 aa)    
Predicted Functional Partners:
SEM70395.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.819
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.649
SEM11403.1
2,4-dienoyl-CoA reductase.
 
 
 0.585
SEM59905.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.495
SEM09859.1
Uncharacterized membrane protein, DUF373 family.
       0.461
SEL94169.1
Flavin reductase like domain-containing protein.
 
 
  0.452
SEM57221.1
methylmalonyl-CoA epimerase.
  
    0.439
SEM09923.1
ABC-type multidrug transport system, ATPase component.
  
  
 0.433
SEL96598.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
   
 
 0.431
SEM20685.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
 
  0.404
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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