STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM09923.1ABC-type multidrug transport system, ATPase component. (634 aa)    
Predicted Functional Partners:
SEM09907.1
ABC-2 type transport system permease protein.
 
 
0.907
SEM17844.1
Lipopolysaccharide transport system permease protein.
    
 0.833
SEM09937.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   
 0.743
SEM06910.1
HlyD family secretion protein.
 
  
 0.690
SEM59905.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.684
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.600
SEM67109.1
ABC transporter.
  
 0.600
SEM67135.1
ABC transporter transmembrane region.
  
 0.600
SEM67152.1
ATP-binding cassette, subfamily B.
  
 0.600
SEL96598.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
  
 0.569
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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