STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM15950.1HlyD family secretion protein. (244 aa)    
Predicted Functional Partners:
SEM15972.1
Hypothetical protein.
       0.613
SEM10174.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
 
 0.611
SEM13874.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
 
 0.608
SEM22886.1
Multidrug efflux pump.
 
 0.604
SEM15933.1
Signal transduction histidine kinase.
       0.563
SEM06502.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.543
SEM22246.1
Outer membrane protein TolC.
 
  0.534
SEM15909.1
Two-component system, NtrC family, response regulator.
       0.520
SEM25846.1
Outer membrane protein TolC; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
  0.508
SEM10155.1
Outer membrane protein, multidrug efflux system.
 
  0.504
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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