STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM16404.1AraC-type DNA-binding protein. (294 aa)    
Predicted Functional Partners:
SEM16378.1
Hypothetical protein.
 
     0.914
SEM41167.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.838
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.819
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.813
SEM39496.1
Glutamate synthase domain-containing protein 1.
    
  0.763
SEL96437.1
HAMP domain-containing protein.
     
 0.691
SEM01299.1
PAS domain S-box-containing protein.
   
 
 0.542
SEM01949.1
PAS domain S-box-containing protein.
   
 
 0.542
SEM77183.1
PAS domain S-box-containing protein.
   
 
 0.542
SEM14860.1
PAS domain S-box-containing protein.
   
 
 0.538
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.