STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM20652.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (210 aa)    
Predicted Functional Partners:
SEL96326.1
PAS domain S-box-containing protein.
 
 0.991
SEL96462.1
PAS domain S-box-containing protein.
 
 0.991
SEM66668.1
Signal transduction histidine kinase.
 
0.990
SEM24218.1
PAS domain S-box-containing protein.
 
 0.989
SEM20629.1
PAS domain S-box-containing protein.
 0.983
SEL96484.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 0.977
SEL96382.1
PAS domain S-box-containing protein.
 
0.972
SEM14860.1
PAS domain S-box-containing protein.
  
 0.949
SEM01299.1
PAS domain S-box-containing protein.
  
 0.933
SEM01949.1
PAS domain S-box-containing protein.
  
 0.933
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.