Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEM07002.1 | SEM26369.1 | SAMN04489760_103176 | SAMN04489760_10893 | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | Lipopolysaccharide export system protein LptA. | 0.823 |
| SEM26337.1 | SEM26349.1 | SAMN04489760_10891 | SAMN04489760_10892 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide export system ATP-binding protein. | 0.792 |
| SEM26337.1 | SEM26369.1 | SAMN04489760_10891 | SAMN04489760_10893 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide export system protein LptA. | 0.818 |
| SEM26337.1 | SEM26386.1 | SAMN04489760_10891 | SAMN04489760_10894 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | LPS export ABC transporter protein LptC. | 0.710 |
| SEM26337.1 | SEM26399.1 | SAMN04489760_10891 | SAMN04489760_10895 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase). | 0.547 |
| SEM26337.1 | hpf | SAMN04489760_10891 | SAMN04489760_10890 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.724 |
| SEM26349.1 | SEM26337.1 | SAMN04489760_10892 | SAMN04489760_10891 | Lipopolysaccharide export system ATP-binding protein. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.792 |
| SEM26349.1 | SEM26369.1 | SAMN04489760_10892 | SAMN04489760_10893 | Lipopolysaccharide export system ATP-binding protein. | Lipopolysaccharide export system protein LptA. | 0.985 |
| SEM26349.1 | SEM26386.1 | SAMN04489760_10892 | SAMN04489760_10894 | Lipopolysaccharide export system ATP-binding protein. | LPS export ABC transporter protein LptC. | 0.977 |
| SEM26349.1 | SEM26399.1 | SAMN04489760_10892 | SAMN04489760_10895 | Lipopolysaccharide export system ATP-binding protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase). | 0.713 |
| SEM26349.1 | bamA | SAMN04489760_10892 | SAMN04489760_10619 | Lipopolysaccharide export system ATP-binding protein. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.472 |
| SEM26349.1 | hpf | SAMN04489760_10892 | SAMN04489760_10890 | Lipopolysaccharide export system ATP-binding protein. | Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.633 |
| SEM26349.1 | lptD | SAMN04489760_10892 | SAMN04489760_10249 | Lipopolysaccharide export system ATP-binding protein. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.701 |
| SEM26369.1 | SEM07002.1 | SAMN04489760_10893 | SAMN04489760_103176 | Lipopolysaccharide export system protein LptA. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.823 |
| SEM26369.1 | SEM26337.1 | SAMN04489760_10893 | SAMN04489760_10891 | Lipopolysaccharide export system protein LptA. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.818 |
| SEM26369.1 | SEM26349.1 | SAMN04489760_10893 | SAMN04489760_10892 | Lipopolysaccharide export system protein LptA. | Lipopolysaccharide export system ATP-binding protein. | 0.985 |
| SEM26369.1 | SEM26386.1 | SAMN04489760_10893 | SAMN04489760_10894 | Lipopolysaccharide export system protein LptA. | LPS export ABC transporter protein LptC. | 0.868 |
| SEM26369.1 | SEM26399.1 | SAMN04489760_10893 | SAMN04489760_10895 | Lipopolysaccharide export system protein LptA. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase). | 0.656 |
| SEM26369.1 | SEM27947.1 | SAMN04489760_10893 | SAMN04489760_10916 | Lipopolysaccharide export system protein LptA. | Peptidyl-prolyl cis-trans isomerase D. | 0.702 |
| SEM26369.1 | SEM62027.1 | SAMN04489760_10893 | SAMN04489760_12731 | Lipopolysaccharide export system protein LptA. | Lipopolysaccharide-assembly. | 0.630 |
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