STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM27880.1Tetratricopeptide repeat-containing protein. (739 aa)    
Predicted Functional Partners:
SEM54656.1
Tfp pilus assembly protein PilF.
 
 
 0.927
SEM27850.1
Exosortase D, VPLPA-CTERM-specific.
 
     0.900
SEM27916.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.879
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.839
SEM27898.1
Polysaccharide export outer membrane protein.
 
    0.838
SEM56501.1
Adenylate cyclase.
 
  
  0.835
SEM63474.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.803
SEM42821.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.802
SEM27864.1
UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase.
 
     0.797
SEM42832.1
Uncharacterized protein, PEP-CTERM system associated.
 
     0.750
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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