STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM27898.1Polysaccharide export outer membrane protein. (209 aa)    
Predicted Functional Partners:
SEM27916.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
 0.972
SEM42821.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
 0.931
SEM27926.1
exopolysaccharide/PEP-CTERM locus tyrosine autokinase.
 
 0.927
SEM42795.1
Non-specific protein-tyrosine kinase.
 
 0.869
SEM27880.1
Tetratricopeptide repeat-containing protein.
 
    0.838
SEM05073.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
  
 
0.837
SEM27850.1
Exosortase D, VPLPA-CTERM-specific.
 
     0.832
SEM42855.1
Polysaccharide export outer membrane protein.
  
  
 
0.813
SEM04983.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.802
SEM17828.1
Lipopolysaccharide transport system ATP-binding protein.
  
  
 0.795
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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