STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM27725.1O-Antigen ligase. (438 aa)    
Predicted Functional Partners:
SEM54977.1
Glycosyltransferase, GT2 family.
  
 
 0.941
SEM27744.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.835
SEM27709.1
RimK-like ATP-grasp domain-containing protein.
       0.788
SEM05037.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.774
SEM04983.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.773
SEM42771.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.678
SEL95168.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.626
SEM57530.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
 
 0.583
SEM54656.1
Tfp pilus assembly protein PilF.
  
 
 0.565
SEM78350.1
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.
    
  0.548
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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