STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM35151.1Sporulation related domain-containing protein. (215 aa)    
Predicted Functional Partners:
SEM22505.1
C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; Belongs to the peptidase S41A family.
    
 
 0.840
SEM47185.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
    
 
 0.840
pyrD
Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
       0.779
SEM26102.1
Dinuclear metal center protein, YbgI/SA1388 family.
   
    0.752
SEM35114.1
Acetyltransferase.
       0.631
SEM35098.1
Glyoxylase, beta-lactamase superfamily II.
       0.610
pyrK
Dihydroorotate oxidase B, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
       0.536
SEM35194.1
Ribosomal-protein-alanine N-acetyltransferase.
       0.470
SEM35212.1
PTS system, mannose-specific IIC component.
       0.470
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.452
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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