STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM37647.1L,D-transpeptidase ErfK/SrfK. (292 aa)    
Predicted Functional Partners:
SEM37665.1
L,D-transpeptidase catalytic domain.
 
  
 0.774
SEM37196.1
L,D-transpeptidase catalytic domain.
 
  
 0.704
SEM18389.1
L,D-transpeptidase catalytic domain.
 
  
 0.677
SEM39103.1
Murein L,D-transpeptidase YcbB/YkuD.
 
  
 0.511
SEM41233.1
Penicillin-binding protein 1A.
     
 0.509
SEM65946.1
Murein L,D-transpeptidase YcbB/YkuD.
 
  
 0.487
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.