STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM36697.1Ca2+-binding protein, RTX toxin-related. (1054 aa)    
Predicted Functional Partners:
SEM36712.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
0.774
SEM59833.1
Membrane fusion protein HasE.
 
  
 0.770
SEL99073.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
     
 0.757
SEM59808.1
ATP-binding cassette, subfamily C, EexD.
 
 
 0.751
SEM38667.1
Chorismate mutase / prephenate dehydratase.
    
  0.729
aroD
3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
    
  0.722
SEM05956.1
Putative baseplate assembly protein.
  
  0.608
SEM14255.1
Protein of unknown function.
  
  0.608
SEM22919.1
Protein of unknown function.
  
  0.608
SEM71928.1
Hypothetical protein.
  
  0.608
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.