STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM42973.1Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family. (300 aa)    
Predicted Functional Partners:
SEM42920.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.999
SEM42934.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
 0.999
SEM42951.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
SEM42980.1
Branched-chain amino acid transport system substrate-binding protein.
 
 
 0.999
SEM23042.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.986
SEL92995.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.968
SEM01021.1
Iron complex transport system ATP-binding protein.
 
 
 0.900
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.501
SEM42903.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
       0.450
SEM63494.1
PAS domain-containing protein.
    
  0.448
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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