STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM45220.1Glycosyltransferase involved in LPS biosynthesis, GR25 family. (246 aa)    
Predicted Functional Partners:
SEM43486.1
Predicted exporter.
 
     0.821
SEM44919.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
 
     0.775
SEM44941.1
Hypothetical protein.
  
     0.772
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
     0.770
SEM57116.1
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.766
SEM25649.1
Hypothetical protein.
  
     0.762
SEM43499.1
Lipid A biosynthesis acyltransferase.
  
     0.712
SEM25632.1
acyl-CoA thioester hydrolase.
  
     0.666
SEM25616.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
     0.652
SEM45241.1
Hypothetical protein.
       0.650
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.