Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM12079.1 | SEM44525.1 | SAMN04489760_104163 | SAMN04489760_1165 | Animal haem peroxidase. | Isochorismatase family protein. | 0.460 |
SEM17808.1 | SEM44525.1 | SAMN04489760_1062 | SAMN04489760_1165 | Methyltransferase, FkbM family. | Isochorismatase family protein. | 0.425 |
SEM44525.1 | SEM12079.1 | SAMN04489760_1165 | SAMN04489760_104163 | Isochorismatase family protein. | Animal haem peroxidase. | 0.460 |
SEM44525.1 | SEM17808.1 | SAMN04489760_1165 | SAMN04489760_1062 | Isochorismatase family protein. | Methyltransferase, FkbM family. | 0.425 |
SEM44525.1 | SEM44541.1 | SAMN04489760_1165 | SAMN04489760_1166 | Isochorismatase family protein. | Hypothetical protein. | 0.773 |
SEM44525.1 | SEM49204.1 | SAMN04489760_1165 | SAMN04489760_1188 | Isochorismatase family protein. | Ca2+-binding protein, EF-hand superfamily. | 0.568 |
SEM44525.1 | SEM61579.1 | SAMN04489760_1165 | SAMN04489760_1274 | Isochorismatase family protein. | Uncharacterized membrane protein. | 0.400 |
SEM44525.1 | murE | SAMN04489760_1165 | SAMN04489760_10967 | Isochorismatase family protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.525 |
SEM44525.1 | pyrH | SAMN04489760_1165 | SAMN04489760_12618 | Isochorismatase family protein. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.417 |
SEM44541.1 | SEM44525.1 | SAMN04489760_1166 | SAMN04489760_1165 | Hypothetical protein. | Isochorismatase family protein. | 0.773 |
SEM49204.1 | SEM44525.1 | SAMN04489760_1188 | SAMN04489760_1165 | Ca2+-binding protein, EF-hand superfamily. | Isochorismatase family protein. | 0.568 |
SEM49204.1 | pyrH | SAMN04489760_1188 | SAMN04489760_12618 | Ca2+-binding protein, EF-hand superfamily. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.434 |
SEM61579.1 | SEM44525.1 | SAMN04489760_1274 | SAMN04489760_1165 | Uncharacterized membrane protein. | Isochorismatase family protein. | 0.400 |
murE | SEM44525.1 | SAMN04489760_10967 | SAMN04489760_1165 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | Isochorismatase family protein. | 0.525 |
murE | pyrH | SAMN04489760_10967 | SAMN04489760_12618 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.523 |
pyrH | SEM44525.1 | SAMN04489760_12618 | SAMN04489760_1165 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Isochorismatase family protein. | 0.417 |
pyrH | SEM49204.1 | SAMN04489760_12618 | SAMN04489760_1188 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ca2+-binding protein, EF-hand superfamily. | 0.434 |
pyrH | murE | SAMN04489760_12618 | SAMN04489760_10967 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.523 |