STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM47134.1Tetratricopeptide repeat-containing protein. (565 aa)    
Predicted Functional Partners:
SEM01299.1
PAS domain S-box-containing protein.
  
 
 0.923
SEM01949.1
PAS domain S-box-containing protein.
  
 
 0.923
SEM77183.1
PAS domain S-box-containing protein.
  
 
 0.923
SEM63474.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 
 0.922
SEM25043.1
Stage II sporulation protein E (SpoIIE).
  
 
 0.919
SEM36916.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.900
SEM29123.1
MCP methyltransferase, CheR-type.
    
 0.892
SEM33917.1
GAF domain-containing protein.
  
 
 0.889
SEM56501.1
Adenylate cyclase.
 
  
  0.889
SEM63494.1
PAS domain-containing protein.
  
 
 0.885
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.