STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM49812.1Cysteine desulfurase family protein. (391 aa)    
Predicted Functional Partners:
SEM49832.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.906
SEM34861.1
Uncharacterized protein family (UPF0051).
  
 
 0.843
SEM04483.1
NifU-like protein.
  
 0.812
SEM45132.1
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.812
SEM34848.1
Fe-S cluster assembly ATP-binding protein.
  
  
 0.810
SEM04456.1
NifU homolog involved in Fe-S cluster formation.
  
 0.746
SEM39428.1
NifU homolog involved in Fe-S cluster formation.
  
 0.746
SEM63308.1
NifU-like N terminal domain-containing protein.
  
 0.746
SEM23236.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.659
SEM38032.1
Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily.
    
   0.659
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.