STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM50210.1Sugar phosphate isomerase/epimerase. (272 aa)    
Predicted Functional Partners:
SEM18187.1
Predicted dehydrogenase.
  
 
 0.909
aroD
3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
    
 0.854
SEM38667.1
Chorismate mutase / prephenate dehydratase.
     
 0.826
SEM23266.1
Ribokinase.
  
 
 0.818
SEM15853.1
Aldehyde dehydrogenase (NAD+).
  
 
 0.593
SEM50264.1
Phosphate ABC transporter membrane protein 2, PhoT family.
       0.491
SEM50246.1
Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.490
SEM50285.1
Phosphate ABC transporter ATP-binding protein, PhoT family; Belongs to the ABC transporter superfamily.
       0.490
SEM50232.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
    0.489
SEM50187.1
Phosphoglycerate mutase.
  
    0.467
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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