STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM51537.1Transcriptional regulator, IclR family. (253 aa)    
Predicted Functional Partners:
SEM41167.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.833
SEM14285.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.568
SEM24110.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.568
SEM51552.1
Aldehyde:ferredoxin oxidoreductase.
 
     0.534
SEM51579.1
Aldehyde ferredoxin oxidoreductase.
 
     0.523
SEM71909.1
TolB protein.
    
 0.490
SEM14782.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.480
SEM68056.1
4Fe-4S binding domain-containing protein.
  
  
  0.475
SEM74151.1
4Fe-4S binding domain-containing protein.
  
  
  0.475
SEM51520.1
Transcriptional regulator, TetR family.
     
 0.437
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.