STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM54347.1Putative DNA-binding domain-containing protein. (108 aa)    
Predicted Functional Partners:
SEM68724.1
Winged helix-turn-helix DNA-binding.
 
     0.975
SEM01509.1
HsdM N-terminal domain-containing protein.
  
    0.807
SEM54365.1
Type III restriction enzyme.
       0.782
SEM54402.1
Ribosomal protein S18 acetylase RimI.
 
     0.529
SEM54385.1
Glycosyl transferase family 2.
  
    0.461
SEM54422.1
Protein of unknown function.
       0.460
SEM41675.1
Type I restriction enzyme, S subunit.
  
    0.444
SEM70875.1
AAA domain-containing protein, putative AbiEii toxin, Type IV TA system.
  
    0.444
SEM70895.1
AAA ATPase domain-containing protein.
  
    0.444
SEM59442.1
Putative ATP-dependent DNA helicase recG C-terminal.
  
     0.424
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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