STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM54365.1Type III restriction enzyme. (1019 aa)    
Predicted Functional Partners:
SEM59425.1
Adenine-specific DNA-methyltransferase.
 
  
 0.887
SEM68707.1
Adenine-specific DNA-methyltransferase.
 
  
 0.887
SEM68597.1
UvrD/REP helicase N-terminal domain-containing protein.
 
     0.788
SEM68654.1
Hypothetical protein.
 
     0.788
SEM54347.1
Putative DNA-binding domain-containing protein.
       0.782
SEM32910.1
DNA modification methylase.
     
 0.549
SEM82502.1
DNA modification methylase.
     
 0.549
SEM54385.1
Glycosyl transferase family 2.
       0.460
SEM54402.1
Ribosomal protein S18 acetylase RimI.
       0.460
SEM54422.1
Protein of unknown function.
       0.460
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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