STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM55894.1Putative iron-only hydrogenase system regulator. (109 aa)    
Predicted Functional Partners:
SEM01002.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.975
SEM67226.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.975
SEM55873.1
Iron-only hydrogenase maturation protein HydG.
 
     0.936
SEM55858.1
Iron-only hydrogenase maturation protein HydE.
 
  
 0.906
SEM01054.1
Iron complex transport system substrate-binding protein.
  
 0.899
SEM67344.1
Iron complex transport system substrate-binding protein.
  
 0.899
SEM67390.1
Iron complex transport system substrate-binding protein.
  
 0.899
SEM18486.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF.
 
     0.781
SEM18592.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
 
     0.637
SEM18756.1
PAS domain S-box-containing protein.
 
     0.621
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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