STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM56002.1Lectin C-type domain-containing protein. (171 aa)    
Predicted Functional Partners:
SEM71141.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
  
 
 0.672
SEM70257.1
Serpin B; Belongs to the serpin family.
  
     0.663
SEM36936.1
Hypothetical protein.
 
     0.626
SEM15095.1
Hypothetical protein.
  
 
 0.605
SEM15338.1
Ankyrin repeat.
 
  
 0.480
SEM67101.1
Hypothetical protein.
  
 
 0.467
SEM55624.1
Hypothetical protein.
  
 
 0.452
SEM68682.1
DNA repair ATPase RecN.
  
 
 0.452
SEM75334.1
Phage tail tape measure protein, TP901 family, core region.
  
 
 0.452
SEM79241.1
Phage tail tape measure protein, TP901 family, core region.
  
 
 0.452
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.