STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM63257.1DNA-binding transcriptional regulator, MarR family. (166 aa)    
Predicted Functional Partners:
SEM63276.1
Hypothetical protein.
 
   
 0.720
SEM63333.1
Protein of unknown function.
 
    0.671
SEM57221.1
methylmalonyl-CoA epimerase.
    
 0.624
SEM41537.1
Bacterioferritin.
  
     0.612
SEM70929.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.590
SEM04143.1
Hypothetical protein.
  
     0.584
SEM63244.1
Transcriptional regulator, ArsR family.
  
  
 0.583
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.567
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.561
SEM06923.1
Tetratricopeptide repeat-containing protein.
  
     0.554
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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