STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM62831.1ABC-2 type transport system permease protein. (245 aa)    
Predicted Functional Partners:
SEM62840.1
ABC-2 type transport system ATP-binding protein.
 
 0.964
SEM62861.1
Hypothetical protein.
 
     0.683
SEM62876.1
Outer membrane lipoprotein-sorting protein.
 
     0.635
SEM62896.1
Putative ABC transport system permease protein.
 
    0.587
SEM11970.1
ABC-2 type transport system ATP-binding protein.
 
 0.563
SEM48101.1
Lipooligosaccharide transport system ATP-binding protein.
 
 0.542
SEM17844.1
Lipopolysaccharide transport system permease protein.
    
  0.526
SEM62811.1
MoxR-like ATPase.
       0.481
SEM06892.1
ABC-2 type transport system ATP-binding protein.
 
 0.480
SEM11956.1
ABC-2 type transport system permease protein.
  
  
 
0.475
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.