STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM65415.1Di-haem cytochrome c peroxidase. (279 aa)    
Predicted Functional Partners:
SEM12056.1
40-residue YVTN family beta-propeller repeat-containing protein.
 
 
 0.700
SEM71909.1
TolB protein.
 
 
 0.674
SEM38961.1
Hypothetical protein.
  
 
 0.643
SEM45027.1
VPLPA-CTERM protein sorting domain-containing protein.
  
 
 0.643
SEM70565.1
Hypothetical protein.
  
 
 0.643
msrB
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.624
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.592
SEM09826.1
4Fe-4S binding domain-containing protein.
  
  
 0.555
SEM58482.1
4Fe-4S binding domain-containing protein.
  
  
 0.477
SEM65366.1
Hypothetical protein.
       0.434
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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