STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM66278.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
SEM66294.1
HDIG domain-containing protein.
 
     0.845
SEM66314.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.708
SEM22282.1
Hypothetical protein.
  
     0.703
SEM68150.1
Uncharacterized protein.
  
     0.654
SEM39653.1
Amidohydrolase.
  
     0.635
SEM44671.1
Uncharacterized conserved protein (COG2071).
  
     0.629
SEM66263.1
Response regulator receiver domain-containing protein.
       0.588
SEM22462.1
Leucyl aminopeptidase (aminopeptidase T).
  
     0.546
SEM40703.1
Putative ABC transport system permease protein.
  
     0.530
SEM17933.1
Cupin domain-containing protein.
  
     0.509
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.