STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM66733.1CRISPR-associated protein, Cse1 family. (525 aa)    
Predicted Functional Partners:
SEM66773.1
CRISPR system Cascade subunit CasC.
 
 
 0.999
SEM66784.1
CRISPR-associated protein, Cas5e family.
 
 
 0.998
SEM66750.1
CRISPR-associated protein, Cse2 family.
  
 
 0.997
SEM66807.1
CRISPR-associated protein, Cse3 family.
 
 
 
 0.996
SEM66720.1
CRISPR-associated helicase, Cas3 family.
 
 
 0.995
cas1-3
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.938
SEM66854.1
CRISPR-associated protein, Cas2 family.
 
   
 0.915
SEM66676.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.579
SEM66700.1
DNA polymerase-3 subunit epsilon.
       0.571
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.