STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM67135.1ABC transporter transmembrane region. (410 aa)    
Predicted Functional Partners:
SEM67109.1
ABC transporter.
     0.986
SEM67152.1
ATP-binding cassette, subfamily B.
 
    
0.760
SEM05805.1
ATPase family associated with various cellular activities (AAA).
   
 0.719
SEL96598.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
 0.707
SEM09923.1
ABC-type multidrug transport system, ATPase component.
  
 0.600
SEL99298.1
Hypothetical protein.
   
 0.539
SEM06880.1
ABC-2 type transport system ATP-binding protein.
   
 0.539
SEM06892.1
ABC-2 type transport system ATP-binding protein.
   
 0.539
SEM11970.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.539
SEM48101.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
 0.539
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.