STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM67215.1Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (258 aa)    
Predicted Functional Partners:
SEM67301.1
Biopolymer transport protein ExbD.
 
 
 0.934
SEM67272.1
Outer membrane transport energization protein ExbB.
 
 
 0.919
SEM01038.1
Iron complex outermembrane recepter protein.
 
 
 
 0.909
SEM67252.1
Iron complex transport system ATP-binding protein.
 
  
 0.835
SEM67226.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.815
SEM47015.1
Cell division and transport-associated protein TolR.
  
 
 0.811
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
 0.793
SEL99073.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
     
 0.792
SEM41167.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
  0.789
SEM05269.1
Methionine synthase (B12-dependent).
    
 0.785
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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