STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM68364.1Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain. (559 aa)    
Predicted Functional Partners:
SEM68293.1
methylmalonyl-CoA mutase C-terminal domain-containing protein/methyltransferase cognate corrinoid proteins.
 
    0.953
SEM68335.1
[methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.949
SEM68314.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.946
SEM63500.1
acetyl-CoA decarbonylase/synthase complex subunit gamma.
   
 
 0.862
SEM05269.1
Methionine synthase (B12-dependent).
   
 
 0.588
SEM68414.1
NitT/TauT family transport system substrate-binding protein.
 
    0.573
SEM23296.1
Methylenetetrahydrofolate reductase (NADPH).
 
     0.567
SEM66229.1
Homocysteine S-methyltransferase.
 
 
 
 0.548
SEM68379.1
NitT/TauT family transport system ATP-binding protein.
  
    0.473
SEM68440.1
NitT/TauT family transport system permease protein.
 
    0.453
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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