STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM68184.1Cobalt/nickel transport system permease protein. (307 aa)    
Predicted Functional Partners:
SEM68241.1
Cobalt/nickel transport system permease protein.
 0.999
SEM68171.1
Cobalt/nickel transport system ATP-binding protein.
 
 0.999
SEM68209.1
Cobalt/nickel transport protein.
 
 0.998
SEM14915.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.984
SEM68273.1
Putative MetA-pathway of phenol degradation.
       0.773
truA-2
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.675
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.623
SEM70395.1
Uroporphyrinogen III methyltransferase / synthase.
     
 0.591
SEM48223.1
Hypothetical protein.
  
     0.518
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
    
 0.488
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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