STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM70223.112,18-didecarboxysiroheme deacetylase. (397 aa)    
Predicted Functional Partners:
SEM70159.1
DNA-binding transcriptional regulator, Lrp family.
 
 0.988
SEM70176.1
Heme b synthase.
 
  
 
0.949
SEM53216.1
DNA-binding transcriptional regulator, Lrp family.
 
 
 0.888
SEM14490.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
  
  
 
0.854
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.764
SEM56501.1
Adenylate cyclase.
   
 
  0.729
SEM70202.1
Porphobilinogen synthase; Belongs to the ALAD family.
  
  
 0.701
SEM70395.1
Uroporphyrinogen III methyltransferase / synthase.
 
  
 0.599
SEM70251.1
Uncharacterized protein, pyridoxamine 5'-phosphate oxidase (PNPOx-like) family.
       0.553
SEM70119.1
Hypothetical protein.
       0.485
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.