STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM71081.1DNA helicase HerA, contains HAS-barrel and ATPase domains. (1798 aa)    
Predicted Functional Partners:
SEM71011.1
Type I restriction enzyme, S subunit.
 
     0.954
SEM71038.1
Serine/threonine protein kinase.
 
     0.945
SEM70953.1
Type I restriction enzyme M protein.
 
     0.936
SEM70991.1
Type I restriction enzyme M protein.
 
     0.933
SEM71057.1
Hypothetical protein.
       0.805
SEM70966.1
Protein of unknown function.
       0.773
SEM71095.1
5-methylcytosine-specific restriction enzyme B.
       0.758
SEM71125.1
5-methylcytosine-specific restriction enzyme subunit McrC.
       0.758
SEM63950.1
Hypothetical protein.
  
     0.493
SEM68597.1
UvrD/REP helicase N-terminal domain-containing protein.
  
     0.427
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.