STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM71759.1Pentapeptide repeat-containing protein. (266 aa)    
Predicted Functional Partners:
SEM71779.1
Hypothetical protein.
       0.548
SEM71740.1
Hypothetical protein.
       0.542
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.486
SEM41564.1
Serine/threonine protein kinase.
  
 
  0.461
SEM66001.1
Serine/threonine protein kinase.
  
 
  0.461
SEM55208.1
HDOD domain-containing protein.
  
 
 0.444
SEM54977.1
Glycosyltransferase, GT2 family.
  
  
 0.414
SEL96326.1
PAS domain S-box-containing protein.
  
 0.407
SEL96462.1
PAS domain S-box-containing protein.
  
 0.407
SEM66668.1
Signal transduction histidine kinase.
  
 0.407
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.