STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM73667.1General secretion pathway protein E. (558 aa)    
Predicted Functional Partners:
SEM73643.1
General secretion pathway protein F.
 
 
 0.989
SEM00328.1
Type IV pilus assembly protein PilC.
 
 
 0.955
SEM51888.1
General secretion pathway protein F.
 
 
 0.955
SEM73690.1
General secretion pathway protein G.
 
 0.953
SEM73416.1
Type II secretion system protein D (GspD).
 
  
 0.925
SEM73627.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
 0.908
SEM73515.1
Tfp pilus assembly protein PilN.
  
 
 0.882
SEM29423.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
 0.879
SEM53015.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.864
SEM51895.1
Type II secretion system protein G (GspG).
 
 0.823
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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