Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM06532.1 | SEM18348.1 | SAMN04489760_103149 | SAMN04489760_10632 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | FKBP-type peptidyl-prolyl cis-trans isomerase FklB. | 0.500 |
SEM06532.1 | SEM74863.1 | SAMN04489760_103149 | SAMN04489760_1422 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.494 |
SEM06532.1 | guaA | SAMN04489760_103149 | SAMN04489760_11352 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.422 |
SEM06532.1 | minC | SAMN04489760_103149 | SAMN04489760_103154 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.474 |
SEM06532.1 | queA | SAMN04489760_103149 | SAMN04489760_10678 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.605 |
SEM06532.1 | ribBA | SAMN04489760_103149 | SAMN04489760_12735 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.753 |
SEM06532.1 | rplS | SAMN04489760_103149 | SAMN04489760_11758 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.686 |
SEM06532.1 | truB | SAMN04489760_103149 | SAMN04489760_101151 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.960 |
SEM18348.1 | SEM06532.1 | SAMN04489760_10632 | SAMN04489760_103149 | FKBP-type peptidyl-prolyl cis-trans isomerase FklB. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.500 |
SEM18348.1 | SEM74863.1 | SAMN04489760_10632 | SAMN04489760_1422 | FKBP-type peptidyl-prolyl cis-trans isomerase FklB. | Hypothetical protein. | 0.686 |
SEM27990.1 | SEM74863.1 | SAMN04489760_10918 | SAMN04489760_1422 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Hypothetical protein. | 0.449 |
SEM27990.1 | minC | SAMN04489760_10918 | SAMN04489760_103154 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.917 |
SEM74863.1 | SEM06532.1 | SAMN04489760_1422 | SAMN04489760_103149 | Hypothetical protein. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.494 |
SEM74863.1 | SEM18348.1 | SAMN04489760_1422 | SAMN04489760_10632 | Hypothetical protein. | FKBP-type peptidyl-prolyl cis-trans isomerase FklB. | 0.686 |
SEM74863.1 | SEM27990.1 | SAMN04489760_1422 | SAMN04489760_10918 | Hypothetical protein. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.449 |
SEM74863.1 | guaA | SAMN04489760_1422 | SAMN04489760_11352 | Hypothetical protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.702 |
SEM74863.1 | minC | SAMN04489760_1422 | SAMN04489760_103154 | Hypothetical protein. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.411 |
SEM74863.1 | queA | SAMN04489760_1422 | SAMN04489760_10678 | Hypothetical protein. | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.825 |
SEM74863.1 | queC | SAMN04489760_1422 | SAMN04489760_10627 | Hypothetical protein. | preQ(0) biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.518 |
SEM74863.1 | ribBA | SAMN04489760_1422 | SAMN04489760_12735 | Hypothetical protein. | GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.570 |
page 1 of 3