STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM78491.1Pilus retraction ATPase PilT. (360 aa)    
Predicted Functional Partners:
SEM53015.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.808
SEM00328.1
Type IV pilus assembly protein PilC.
 
  
 0.794
SEM51888.1
General secretion pathway protein F.
 
  
 0.793
SEM73643.1
General secretion pathway protein F.
 
  
 0.793
SEL95485.1
Type IV pilus assembly protein PilM.
 
   
 0.781
SEM29423.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.767
SEM78471.1
Twitching motility protein PilT.
 
    
0.688
SEM78450.1
Response regulator receiver domain-containing protein.
 
     0.633
SEM60611.1
Competence protein ComEC.
     
 0.566
SEL95394.1
Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.
 
   
 0.543
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.