STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM78471.1Twitching motility protein PilT. (390 aa)    
Predicted Functional Partners:
SEM78450.1
Response regulator receiver domain-containing protein.
 
     0.862
SEM53015.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.797
SEM00328.1
Type IV pilus assembly protein PilC.
 
  
 0.794
SEM51888.1
General secretion pathway protein F.
 
  
 0.793
SEM73643.1
General secretion pathway protein F.
 
  
 0.793
SEM29423.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.723
SEL95485.1
Type IV pilus assembly protein PilM.
 
   
 0.693
SEM78491.1
Pilus retraction ATPase PilT.
 
    
0.688
SEM60611.1
Competence protein ComEC.
     
 0.566
SEM45495.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
 
  
0.509
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.