STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM81374.1Radical SAM additional 4Fe4S-binding SPASM domain-containing protein. (341 aa)    
Predicted Functional Partners:
SEM70159.1
DNA-binding transcriptional regulator, Lrp family.
 
 
 0.809
SEM53216.1
DNA-binding transcriptional regulator, Lrp family.
 
 
 0.767
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.764
SEM56501.1
Adenylate cyclase.
   
 
  0.729
SEM14490.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
  
  
  0.703
SEM70176.1
Heme b synthase.
  
     0.597
SEM81403.1
Radical SAM superfamily protein.
       0.518
SEM81415.1
Exopolysaccharide biosynthesis protein EpsI, predicted pyruvyl transferase.
       0.502
SEM81354.1
Right handed beta helix region.
       0.490
SEM27823.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.481
Your Current Organism:
Syntrophus gentianae
NCBI taxonomy Id: 43775
Other names: CIP 105111, DSM 8423, S. gentianae, strain HQG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.