Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_900128435_00326 | H3K5X2_9FIRM | GCA_900128435_00326 | GCA_900128435_00129 | annotation not available | Uncharacterized protein; Belongs to the 'phage' integrase family. | 0.512 |
GCA_900128435_00326 | H3K846_9FIRM | GCA_900128435_00326 | GCA_900128435_01798 | annotation not available | ComF family protein. | 0.461 |
GCA_900128435_00326 | H3KA24_9FIRM | GCA_900128435_00326 | GCA_900128435_00854 | annotation not available | Prephenate/arogenate dehydrogenase domain-containing protein. | 0.424 |
GCA_900128435_00326 | topA | GCA_900128435_00326 | GCA_900128435_00445 | annotation not available | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.477 |
GCA_900128435_00326 | xpt | GCA_900128435_00326 | GCA_900128435_02168 | annotation not available | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.576 |
H3K5X2_9FIRM | GCA_900128435_00326 | GCA_900128435_00129 | GCA_900128435_00326 | Uncharacterized protein; Belongs to the 'phage' integrase family. | annotation not available | 0.512 |
H3K5X2_9FIRM | H3K846_9FIRM | GCA_900128435_00129 | GCA_900128435_01798 | Uncharacterized protein; Belongs to the 'phage' integrase family. | ComF family protein. | 0.461 |
H3K5X2_9FIRM | H3K969_9FIRM | GCA_900128435_00129 | GCA_900128435_01212 | Uncharacterized protein; Belongs to the 'phage' integrase family. | ParB-like partition protein; Belongs to the ParB family. | 0.463 |
H3K5X2_9FIRM | H3KA24_9FIRM | GCA_900128435_00129 | GCA_900128435_00854 | Uncharacterized protein; Belongs to the 'phage' integrase family. | Prephenate/arogenate dehydrogenase domain-containing protein. | 0.424 |
H3K5X2_9FIRM | dnaA | GCA_900128435_00129 | GCA_900128435_01246 | Uncharacterized protein; Belongs to the 'phage' integrase family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.431 |
H3K5X2_9FIRM | hslU | GCA_900128435_00129 | GCA_900128435_00442 | Uncharacterized protein; Belongs to the 'phage' integrase family. | ATP-dependent protease ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.435 |
H3K5X2_9FIRM | hslV | GCA_900128435_00129 | GCA_900128435_00443 | Uncharacterized protein; Belongs to the 'phage' integrase family. | ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.536 |
H3K5X2_9FIRM | mfd | GCA_900128435_00129 | GCA_900128435_01865 | Uncharacterized protein; Belongs to the 'phage' integrase family. | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.521 |
H3K5X2_9FIRM | topA | GCA_900128435_00129 | GCA_900128435_00445 | Uncharacterized protein; Belongs to the 'phage' integrase family. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.552 |
H3K5X2_9FIRM | xpt | GCA_900128435_00129 | GCA_900128435_02168 | Uncharacterized protein; Belongs to the 'phage' integrase family. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.461 |
H3K846_9FIRM | GCA_900128435_00326 | GCA_900128435_01798 | GCA_900128435_00326 | ComF family protein. | annotation not available | 0.461 |
H3K846_9FIRM | H3K5X2_9FIRM | GCA_900128435_01798 | GCA_900128435_00129 | ComF family protein. | Uncharacterized protein; Belongs to the 'phage' integrase family. | 0.461 |
H3K846_9FIRM | H3KA24_9FIRM | GCA_900128435_01798 | GCA_900128435_00854 | ComF family protein. | Prephenate/arogenate dehydrogenase domain-containing protein. | 0.580 |
H3K846_9FIRM | xpt | GCA_900128435_01798 | GCA_900128435_02168 | ComF family protein. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.548 |
H3K969_9FIRM | H3K5X2_9FIRM | GCA_900128435_01212 | GCA_900128435_00129 | ParB-like partition protein; Belongs to the ParB family. | Uncharacterized protein; Belongs to the 'phage' integrase family. | 0.463 |
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