STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K711_9FIRMHTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
H3K710_9FIRM
Cysteine desulfurase.
 
     0.789
H3K708_9FIRM
UPF0033 domain-containing protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.764
H3K709_9FIRM
Sulf_transp domain-containing protein.
 
     0.755
H3K712_9FIRM
Riboflavin transporter; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
       0.613
H3K707_9FIRM
DUF3343 domain-containing protein.
 
     0.595
H3K713_9FIRM
Uncharacterized protein.
       0.585
H3K7P4_9FIRM
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.560
H3KB84_9FIRM
Uncharacterized protein.
  
 
 0.523
YedF
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
  
   
 0.518
H3KAK6_9FIRM
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.411
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.