H3KA72_9FIRM protein (Megamonas funiformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3KA72_9FIRM

NAGPA domain-containing protein. (479 aa)

Predicted Functional Partners:

H3K9J1_9FIRM

0.710

H3K9N6_9FIRM

0.705

H3KA74_9FIRM

0.702

H3K8A0_9FIRM

0.699

H3K9J3_9FIRM

0.696

H3K8T5_9FIRM

0.690

H3K843_9FIRM

0.687

H3K649_9FIRM

0.669

H3K4L7_9FIRM

0.663

RuvX

0.629

Your Current Organism:

Megamonas funiformis

NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3K4L7_9FIRM	H3K649_9FIRM	GCA_900128435_02174	GCA_900128435_00185	LytR_cpsA_psr domain-containing protein.	SLH domain-containing protein.	0.682
H3K4L7_9FIRM	H3K8A0_9FIRM	GCA_900128435_02174	GCA_900128435_01721	LytR_cpsA_psr domain-containing protein.	SLH domain-containing protein.	0.718
H3K4L7_9FIRM	H3K9J1_9FIRM	GCA_900128435_02174	GCA_900128435_01015	LytR_cpsA_psr domain-containing protein.	SLH domain-containing protein.	0.687
H3K4L7_9FIRM	H3K9J3_9FIRM	GCA_900128435_02174	GCA_900128435_01016	LytR_cpsA_psr domain-containing protein.	SLH domain-containing protein.	0.696
H3K4L7_9FIRM	H3K9N6_9FIRM	GCA_900128435_02174	GCA_900128435_01065	LytR_cpsA_psr domain-containing protein.	SLH domain-containing protein.	0.694
H3K4L7_9FIRM	H3KA72_9FIRM	GCA_900128435_02174	GCA_900128435_00806	LytR_cpsA_psr domain-containing protein.	NAGPA domain-containing protein.	0.663
H3K4L7_9FIRM	RuvX	GCA_900128435_02174	GCA_900128435_00775	LytR_cpsA_psr domain-containing protein.	Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.	0.699
H3K649_9FIRM	H3K4L7_9FIRM	GCA_900128435_00185	GCA_900128435_02174	SLH domain-containing protein.	LytR_cpsA_psr domain-containing protein.	0.682
H3K649_9FIRM	H3K843_9FIRM	GCA_900128435_00185	GCA_900128435_01801	SLH domain-containing protein.	Uncharacterized protein.	0.691
H3K649_9FIRM	H3K8T5_9FIRM	GCA_900128435_00185	GCA_900128435_01508	SLH domain-containing protein.	LytR_cpsA_psr domain-containing protein.	0.679
H3K649_9FIRM	H3KA72_9FIRM	GCA_900128435_00185	GCA_900128435_00806	SLH domain-containing protein.	NAGPA domain-containing protein.	0.669
H3K649_9FIRM	H3KA74_9FIRM	GCA_900128435_00185	GCA_900128435_00804	SLH domain-containing protein.	Peptidase S55 domain-containing protein.	0.745
H3K649_9FIRM	RuvX	GCA_900128435_00185	GCA_900128435_00775	SLH domain-containing protein.	Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.	0.772
H3K843_9FIRM	H3K649_9FIRM	GCA_900128435_01801	GCA_900128435_00185	Uncharacterized protein.	SLH domain-containing protein.	0.691
H3K843_9FIRM	H3K8A0_9FIRM	GCA_900128435_01801	GCA_900128435_01721	Uncharacterized protein.	SLH domain-containing protein.	0.742
H3K843_9FIRM	H3K9J1_9FIRM	GCA_900128435_01801	GCA_900128435_01015	Uncharacterized protein.	SLH domain-containing protein.	0.707
H3K843_9FIRM	H3K9J3_9FIRM	GCA_900128435_01801	GCA_900128435_01016	Uncharacterized protein.	SLH domain-containing protein.	0.707
H3K843_9FIRM	H3K9N6_9FIRM	GCA_900128435_01801	GCA_900128435_01065	Uncharacterized protein.	SLH domain-containing protein.	0.707
H3K843_9FIRM	H3KA72_9FIRM	GCA_900128435_01801	GCA_900128435_00806	Uncharacterized protein.	NAGPA domain-containing protein.	0.687
H3K843_9FIRM	RuvX	GCA_900128435_01801	GCA_900128435_00775	Uncharacterized protein.	Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.	0.656