STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K9S5_9FIRMLactamase_B domain-containing protein. (267 aa)    
Predicted Functional Partners:
H3K9S4_9FIRM
PDZ domain-containing protein.
  
  
 0.710
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.684
H3K9S6_9FIRM
Uncharacterized protein; Belongs to the Fur family.
  
    0.475
H3K8W9_9FIRM
2-Hacid_dh_C domain-containing protein.
   
    0.463
H3K9S2_9FIRM
Uncharacterized protein.
  
    0.453
H3KAU5_9FIRM
Histidine kinase domain-containing protein.
  
  
 0.432
H3K810_9FIRM
Uncharacterized protein; Belongs to the 5'-nucleotidase family.
  
  
 0.419
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.