STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K9K6_9FIRMHTH lacI-type domain-containing protein. (338 aa)    
Predicted Functional Partners:
H3K9K3_9FIRM
Uncharacterized protein.
 
    0.824
xylB
Xylulose kinase.
 
  
 0.794
H3K9R1_9FIRM
HTH lacI-type domain-containing protein.
 
  
 0.789
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.739
H3KAG8_9FIRM
ABC transporter domain-containing protein.
  
 
 0.650
GCA_900128435_01845
annotation not available
 
  
 0.628
H3K9F1_9FIRM
HTH gntR-type domain-containing protein.
 
  
 0.544
H3K9K7_9FIRM
Sugar porter (SP) family MFS transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
    0.533
H3KAC0_9FIRM
Histidine kinase.
    
 
 0.478
H3K9N8_9FIRM
Histidine kinase domain-containing protein.
    
 
 0.478
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.