STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K8I4_9FIRMLar_N domain-containing protein. (420 aa)    
Predicted Functional Partners:
LarB
AIRC domain-containing protein.
 
  
 0.760
LarE
TIGR00268 family protein.
 
  
 0.742
NifJ
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
     
 0.692
H3KAW8_9FIRM
Uncharacterized protein.
 
  
 0.617
H3K6N4_9FIRM
TIGR00299 family protein.
 
  
 0.589
H3K8I3_9FIRM
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.543
H3K8I5_9FIRM
Sigma-54 factor interaction domain-containing protein.
       0.513
H3K8I6_9FIRM
Chlorophyll synthesis pathway, bchC.
 
     0.430
CbiM
Cobalamin biosynthesis protein CbiM.
  
    0.425
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.