STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K4J3_9FIRMUncharacterized protein. (179 aa)    
Predicted Functional Partners:
H3K4J2_9FIRM
F420_ligase domain-containing protein.
 
     0.903
GCA_900128435_00186
annotation not available
  
     0.774
H3KA99_9FIRM
OstA-like_N domain-containing protein.
  
     0.774
LptC
Uncharacterized protein.
  
     0.774
H3KA79_9FIRM
Uncharacterized protein.
  
     0.774
H3K9X2_9FIRM
Uncharacterized protein.
  
     0.774
H3K641_9FIRM
Uncharacterized protein.
  
     0.770
FtsL
Cell division protein FtsL.
  
     0.770
H3KA81_9FIRM
Uncharacterized protein.
  
     0.768
H3K8L0_9FIRM
Acyl_transf_3 domain-containing protein.
  
     0.767
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.